Introduction

bioimageit_core is the main library of the BioImageIT project. It implements all the functions needed by scientists to facilitate data management and analysis. bioimageit_core can interact with datasets stored in file systems or with a database like Omero for example. bioimageit_core is able to run data processing tools using wrappers and packaging systems (Conda) or using containers (Docker, Singularity).

Context

bioimageit_core has been developed by Sylvain Prigent in a project funded by France-BioImaging. bioimageit_core is just the python API of the project. Please find all the other developed tools here.

What bioimageit_core is

bioimageit_core is a python3 library the provide a python API to facilitate writing data processing scripts, wrapping data analysis tools from any language and ease communication with an experiment database.